EGAF00003248396 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00003248396
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	407105641
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	150915	0.0	15.574332	1
TCGGAAG	160835	0.0	14.624598	2
CGGAAGA	178280	0.0	13.246416	3
TATGCCG	55910	0.0	9.9621105	45-49
CGTATGC	69160	0.0	8.242338	40-44
CTCGTAT	64970	0.0	8.131087	40-44
TCTCGTA	70450	0.0	7.5171313	40-44
TGCCGTC	77155	0.0	7.4576864	45-49
GCCGTCT	81235	0.0	7.152744	45-49
ATGCCGT	82470	0.0	6.999914	45-49
TCGTATG	78825	0.0	6.9171343	40-44
AGAGCAC	400385	0.0	6.486931	7
AGCACAC	423295	0.0	6.2144475	9
GAGCACA	435560	0.0	5.9763446	8
GAAGAGC	451190	0.0	5.7805877	5
CGTCTTC	107885	0.0	5.591507	50-54
ATCTCGT	92110	0.0	5.2488303	35-39
GATCGGA	120085	0.0	5.155418	145