FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003248397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003248397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407105641
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1047400.021.0489929
GAGCGTC1339600.016.6903958
AGAGCGT1639450.013.8456147
ATCGGAA1691700.013.7796551
TCGGAAG1789400.013.0360372
AAGAGCG1983400.011.7845296
CGGAAGA1981800.011.7632753
CGCCGTA439500.011.67693745-49
GTCGCCG590900.09.14136840-44
TCGCCGT524000.08.44652140-44
GCCGTAT661950.08.11861645-49
GGTCGCC752800.07.356412440-44
TGGTCGC748100.07.31542640-44
CCGTATC770000.07.17141445-49
CGTATCA855700.06.625991345-49
GTGGTCG856000.06.562665540-44
GAAGAGC4670700.05.56935645
GCGTCGT975500.05.353937610-14
CGTCGTG1005200.05.24190710-14
TCCGATC309800.05.09339431
Produced by FastQC (version 0.11.5)