FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003248413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003248413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438846875
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1356750.035.289469
GAGCGTC1677150.028.6345048
ATCGGAA2026150.025.7422981
AGAGCGT1983200.024.46467
TCGGAAG2161300.024.1010482
CGGAAGA2355600.022.0753973
AAGAGCG2423450.021.2081726
CGCCGTA743650.013.10077645-49
GTCGCCG935050.011.09860640-44
TCGCCGT829750.011.04131340-44
GCCGTAT977400.010.41406345-49
GAAGAGC5448200.09.9726745
AGCGGCG472050.09.9691999
TGGTCGC1091050.09.4731840-44
GGTCGCC1116400.09.45803740-44
CCGTATC1092450.09.41816145-49
CGTATCA1172600.08.81025745-49
GTGGTCG1197650.08.6469440-44
GCGTCGT1252600.07.927872710-14
CGTCGTG1283200.07.76706810-14
Produced by FastQC (version 0.11.5)