FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003249306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003249306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447949333
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1695950.047.009891
TCGGAAG1828250.043.4795572
CGGAAGA2021450.039.333283
ACGTCCG892600.018.40252530-34
AGAGCAC4545150.018.1055097
TATGCCG957800.017.33818245-49
AGCACAC4808900.017.0446559
CGTCCGC981850.016.91578930-34
GAGCACA4972050.016.5261848
GAAGAGC5120850.016.1027535
GTCCGCA1067950.015.46376730-34
CGTATGC1088850.015.27139745-49
CTCGTAT956000.014.29810940-44
TCCGCAC1126600.013.95867730-34
TCTCGTA991000.013.73460940-44
ATGCCGT1223650.013.56655345-49
GCCGTCT1264500.012.9659750-54
TGCCGTC1204400.012.96240345-49
CGCACAT1291200.012.77773135-39
CCGCACA1355900.012.31877535-39
Produced by FastQC (version 0.11.5)