FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003249794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003249794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192213302
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA585450.045.5308571
TCGGAAG633550.042.1904072
CGGAAGA724700.036.8392033
AGAGCAC1700350.016.310687
AGCACAC1827000.015.1879139
GAGCACA1963650.014.3340218
TCGTATC399100.013.99066635-39
GAAGAGC2070650.013.5198655
TATGCCG422350.013.21934845-49
GTCACGA432150.013.18560625-29
CTCGTAT407350.013.08703540-44
TCTCGTA427250.012.41639940-44
TATCTCG439850.012.06071940-44
ATGCCGT494000.011.36657345-49
CGAATTC515950.011.18642230-34
ACACGTC521200.010.98205110-14
GAATTCG540200.010.66814830-34
CGTCTGA544100.010.54892415-19
CGTATCT523500.010.39461735-39
ATCTCGT525550.010.26780740-44
Produced by FastQC (version 0.11.5)