EGAF00003249848 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00003249848
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	469042298
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	82745	0.0	25.773842	1
TCGGAAG	100405	0.0	21.46674	2
CGGAAGA	122980	0.0	17.629389	3
TATGCCG	61240	0.0	7.478212	45-49
CTCGTAT	63345	0.0	6.831375	40-44
TCTCGTA	68040	0.0	6.466519	40-44
AGAGCAC	384800	0.0	6.3348007	7
GTCACGA	73830	0.0	6.300115	25-29
AGCACAC	414260	0.0	5.9000497	9
ATGCCGT	84935	0.0	5.668465	45-49
CGTATGC	83975	0.0	5.5917044	45-49
GAGCACA	442345	0.0	5.5795236	8
GAAGAGC	453815	0.0	5.4945397	5
ACGAGAT	92115	0.0	5.2848988	30-34
ACACGTC	92525	0.0	5.1954937	10-14
ATCTCGT	92120	0.0	5.012238	40-44
TGCCGTC	97050	0.0	5.010151	45-49
CGTCTGA	96810	0.0	5.0014796	15-19