FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003249921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003249921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2973986
Sequences flagged as poor quality0
Sequence length101-126
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCA210230.7068964009918003No Hit
CCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCAC130320.4381997763271246No Hit
CCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC123990.4169152107642739No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATC122680.41251034806485304No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCAC104200.35037152158752594No Hit
CACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC91470.3075670161191075No Hit
CCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC87640.29468867708186924No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACCAC81820.2751189817302435No Hit
CACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC80330.2701088707209785No Hit
CCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC76120.25595278525184717No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCA75680.2544732893833394No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACTAC74770.25141342292801644No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCA70970.23863595860908557No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACA69560.23389484684864015No Hit
CCCATCACCACCACCACCACGGTGACACCAACCCCAACACCCACCGGCAC64410.2165780202058786No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACCACGGTGACCCCA64030.21530027377398547No Hit
CCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACC61680.2073984208399098No Hit
CCCACCGGCACACAGACCCCAACAACGACACCCATCAGCACCACCACCAC57570.19357858443180298No Hit
CAACCTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACA57310.1927043368731393No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCAAC54160.1821124914508676No Hit
CCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCACCACCAC53850.18107011936169168No Hit
CCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC52820.17760675403313936No Hit
CACAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCA52150.17535388532427523No Hit
CACAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCA51880.1744460128595091No Hit
CACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGC51640.1736390151130503No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCA51310.17252939321166946No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATC49500.16644328520712606No Hit
CCCATCTCCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC47590.16002092814155816No Hit
CCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCA47180.15864230699135773No Hit
CATCGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCC46740.15716281112284994No Hit
CATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACAC46590.1566584375313132No Hit
CTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT46380.15595231450316174No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACCACGGTGACCCCAAC46040.15480906769567848No Hit
CAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACC44050.14811771138129096No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATC43990.14791596194467627No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT42180.14182985394013287No Hit
CCGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCAC41890.14085473166316184No Hit
CAACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCC41880.1408211067570594No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCAC40910.13755949086512176No Hit
CAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCAAC40810.13722324180409726No Hit
CAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCAAC39400.13248213004365184No Hit
CGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACC38080.1280436424381285No Hit
CCCATCACCACCACTACGGTGACCCCAACCCCAACACCCACCAGCACACA37500.1260933978841864No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT37300.1254208997621374No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACA37120.12481565145229331No Hit
CGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACC36300.12205840915189244No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA36270.12195753443358509No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC36120.12145316084204835No Hit
GCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC36010.12108328687492141No Hit
CATCGACACCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCC35880.12064616309558956No Hit
CCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCAC34970.11758629664026664No Hit
CCCACCGGCACACAGAGTACAACCCTGACACCCATCACCACCACCACCAC34620.11640942492668088No Hit
CCCTGACACCCATCACCACCACCACCACGGTGACACCAACCCCAACACCC34510.11603955095955394No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACACCCATC34410.11570330189852945No Hit
CCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC34270.11523255321309515No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACACCCATCA34180.1149299290581731No Hit
ACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCAC32270.10850757199260522No Hit
CCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCAGCACCAC31130.10467433269692596No Hit
CACAGACCCCAACCCCGACACCCATCACCACCACCACCACGGTGACCCCA31050.10440533344810633No Hit
CACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACC31030.10433808363590144No Hit
CCCACCGGCACACAGACCCCAACCCCGACACCCATCACCACCACCACCAC30640.10302671229790591No Hit
CACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACT30240.10168171605380794No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)