FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003249945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003249945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4480956
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT141930.31674044556563374No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG104930.2341687800549704No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA48270.10772254849188431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)