FastQCFastQC Report
Thu 9 Feb 2023
EGAF00003250201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003250201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences224729256
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA3541790.1576025330676127No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG2600590.11572102565942727No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT2529090.11253941943366733No Hit
GTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGG2522640.11225240740351135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)