FastQCFastQC Report
Sun 2 Apr 2023
EGAF00003250205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003250205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48495115
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG1245850.25690216426953516No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1011730.20862513677924055No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA788820.16265968232058012No Hit
CTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAA682070.14064715590425964No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT681920.14061622495379172No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG663920.13690451089764402No Hit
GGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATG545960.1125804114496893No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA514350.10606222915442103No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA498050.1027010658702428No Hit
CTCAGGAGTTTGATAGTTCTTGGGCAGTGAGAGTGAGTAGTAGAATGTTT496160.1023113358943473No Hit
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC487600.1005462096543126No Hit
GTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGG484990.10000801111617118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)