FastQCFastQC Report
Tue 27 Sep 2022
EGAF00003250206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003250206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48495115
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC821110.16931808492463624No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT668290.1378056325879421No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC544560.1122917225786556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)