FastQCFastQC Report
Sat 13 May 2023
EGAF00003250209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003250209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73448396
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG961630.13092593608170833No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG780660.10628686840213639No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT754410.10271293058598584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)