FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003287451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003287451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418719105
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1165950.053.6627359
GAGCGTC1470600.042.621298
ATCGGAA1769700.037.5416681
AGAGCGT1758050.035.8457457
TCGGAAG1881300.035.2181322
CGGAAGA2077550.031.8633983
AAGAGCG2137700.030.6190456
CGCCGTA707350.017.8327945-49
TCGCCGT791650.015.38655740-44
GTCGCCG881350.015.00176940-44
GAAGAGC4987300.013.7162255
GCCGTAT944750.013.70775245-49
GGTCGCC1043100.012.853415540-44
TGGTCGC1031150.012.73099340-44
CCGTATC1056800.012.33392445-49
GCGTCGT1080850.011.73737110-14
GTGGTCG1125750.011.69594840-44
CGTATCA1136250.011.5901745-49
CGTCGTG1108650.011.50843910-14
GTCGTGT1345000.09.60146210-14
Produced by FastQC (version 0.11.5)