FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003289893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003289893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3292
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATTAGTAGCTCACCACGAGCCAGGCAGCTCCTCTGTGTGGGTGGGAGG60.18226002430133656No Hit
TCACGCGTAGCTCACCGTGTCTGTACTCTCATTGCTGGGGGTGGGTGAGG60.18226002430133656No Hit
TGCATAGTAGCTCATCCTCATTGTCCAGCAGTCGATGTGGATAGCAAATG50.15188335358444716No Hit
TGCGTTGTAGCTCAAGAATTTAATGTGGTCTTCTGTTTAGAATTTCTGAA50.15188335358444716No Hit
AATTGAAGTAGCTCATCCTAGCACTGCCAATGGGGTTACAGCTACTCCTG40.12150668286755771No Hit
CCCTTACAGTAGCTCAACAGTGTGGCACAGCTAACTGCAGACCCTCCTTC40.12150668286755771No Hit
AGATAAAGTAGCTCACTGGCAAATCTCACAGATGAGGAAAGCTCCCAGGG40.12150668286755771No Hit
TGAGTGTCAGTAGCTCACTATAACTTCAGTAGCTCAACTCTGAAAATACG40.12150668286755771No Hit
CGGGATAGTAGCTCACCTTGGTCTCCTCCAGCCGGTGGTAGAGGCGCCAG40.12150668286755771No Hit
TAGATCAGTAGCTCACCTGCCTTCTTGCGAGTCACATCTCCCGAGCCAGG40.12150668286755771No Hit
GAATCTTCAGTAGCTCAACCCACCACTCCTGGGTCCCAGAGATACAAGCC40.12150668286755771No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)