FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003289896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003289896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3307
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCAGGGTAGCTCACATTATTCATCTGATTTAGTCCTTTGGAGGCAGACT50.15119443604475355No Hit
GGCGGGTCAGTAGCTCATTCCAAAAAGAATGAGGTGCTTACCAGCTCTCC50.15119443604475355No Hit
CTCGTCGTAGCTCACCCTCAAACACGTGCCTGGCTTTCCCCTCTTGGGGT50.15119443604475355No Hit
TGGAGCTCAGTAGCTCATTAAAACTGGGGCCCCTCAGACCCCCAGGTGTC40.12095554883580284No Hit
GGTCTTCAGTAGCTCATGTGAAAAGACAAAGACCACTAGTTCCAATCTTA40.12095554883580284No Hit
AGTTTTCAGTAGCTCATAAGAGAATTACACACAAAAAGCAAAAAAGGGAT40.12095554883580284No Hit
CGCATTTCAGTAGCTCACCACTAATTTTCTTACTACTTTTCTTGTGCAAG40.12095554883580284No Hit
GCCTCACAGTAGCTCAAGACGGTCCTCCCTGCTGCCTAACTGCTCCCTCT40.12095554883580284No Hit
CGGAATGTAGCTCACCAGTGGCCGGTTATCCCTGGGGATCAGTAGTGACT40.12095554883580284No Hit
CACACCCAGTAGCTCATGATCATGAAAAGAGTGGGCTCAATAATTTTCCA40.12095554883580284No Hit
CGTCCGAGTAGCTCATGGGTATATTCTGAATTTGAGAGGCAAATGCAGGT40.12095554883580284No Hit
GTCCGTAGTAGCTCACCACAGACACATTGGGCACAAGCCCAGAACCTACA40.12095554883580284No Hit
GTTAATAGTAGCTCACCTCGACTTCGTGGCTGCGATTGCTGCATTCACTT40.12095554883580284No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)