FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003289898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003289898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3256
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAAGTAGCTCATATTATTTGCTTTTGGAGCCCTGAGGCTCCAAACAA60.18427518427518427No Hit
AGCTTGTCAGTAGCTCAAGTTCTGGGTGGAGAGGCGGGAGACGAACTCCT60.18427518427518427No Hit
ACCGAAAGTAGCTCACCCCCGCCTTGGTCCAGCCCTCACCCTGTCTCCCC40.12285012285012285No Hit
ATATCTAGTAGCTCACCCTGAGCTTCTGTGTGCTCTACATTTCATAGGTA40.12285012285012285No Hit
GTATGCAGTAGCTCACATTCATGCTGTTGCAGGCGTGCAGGTCGGTGGTG40.12285012285012285No Hit
TCTAAGAGTAGCTCAAGCGGACAGCAGGGTTAACAGGTGGGCGCCGATGC40.12285012285012285No Hit
AGCAACCAGTAGCTCATGCCTTCTTTCACCTTGCCAAAGACCACATGCTT40.12285012285012285No Hit
TTTTGTTCAGTAGCTCATGGTCAGGACCTGCTGAGCACAGTGAGCATTAG40.12285012285012285No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)