FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003289902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003289902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3159
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGTGTCAGTAGCTCACCAAGACCCCTAAACCTCAAAGTATAATTCCTC50.15827793605571383No Hit
GCCTAAAGTAGCTCACAGGCCTGCAGAGGCCGACTGGAGGTCAAGTTCGG50.15827793605571383No Hit
TAGAGGAGTAGCTCATCATGTTCACTGTGGATGCCATGAAAAAGGCATGC40.12662234884457108No Hit
TTGCAAGTAGCTCATTGAGGACATCGTCAGTTTAGTGTTTTACGTCATTG40.12662234884457108No Hit
TGGCTGTCAGTAGCTCATAGAGAGAACAATCATTAGGGCTGGGGTGTGTG40.12662234884457108No Hit
TGGAGCAGTAGCTCAGGCGGCATTCCCGTCAGCGATGCCCTTGACGGCAT40.12662234884457108No Hit
GAACATAGTAGCTCACCTGATGGCCATGTGATGATGTTGACAACCCCTGA40.12662234884457108No Hit
AATTTACAGTAGCTCACCCAGAGCTGGCAATCTGGGCTTGTAGGCCTTTT40.12662234884457108No Hit
TATTAGCAGTAGCTCAGGTGTTAGGGAAGTAAATCGATACTCGGTTGCGG40.12662234884457108No Hit
CTCCACCAGTAGCTCATAGTGGTGCCCCCCTCACTGCACCCCAAAGCCCC40.12662234884457108No Hit
GAACAGCAGTAGCTCACCCGAGTCTCCTGCCTCCTCGGGACGCTCCGCGT40.12662234884457108No Hit
GATGGAGTAGCTCACCACGTCCTTTTCAAAGTGTAACTTCTTCGACACCC40.12662234884457108No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)