FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003291872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1188203
Sequences flagged as poor quality0
Sequence length8-620
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACT238612.0081585385662213No Hit
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG230721.94175574375759No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT171861.446385844843011No Hit
AATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTA14210.11959235921807974No Hit
GTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCT13460.1132803064796167No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA12070.1015819687376652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)