FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003291879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1090308
Sequences flagged as poor quality0
Sequence length8-364
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG171661.5744175040447288No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT128201.1758145404784703No Hit
AATTAGGCTGTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAA67080.6152389966871746No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA38920.3569633534744311No Hit
GGCAGGTCAATTTCACTGGTTAAAAAGTAAGAGACAGCTGAACCCTCGTG12610.1156553927880929No Hit
AATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTA10980.10070548872428708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)