FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003291913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences857948
Sequences flagged as poor quality0
Sequence length25-316
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG109871.2806137434902813No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT73900.8613575647941367No Hit
GCCATACTAGTCTTTGCCGCTGTGAGTAGTGCCACAATAAACATACGTGT16510.19243590520637613No Hit
GGCAGGTCAATTTCACTGGTCATTACAGAAATGCAAATCAAAACCACAAT13920.16224759542536377No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA13360.1557203933105503No Hit
GCCATACTAGTCTTTGCCGCAACATCCGCCTCCCGGGTTCAAGCGATTCT8690.10128818996023069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)