FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003291918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1187086
Sequences flagged as poor quality0
Sequence length8-621
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG250162.107345213404926No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT178981.5077256407707613No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA16260.13697406927552006No Hit
AATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTA15700.13225663515532993No Hit
GTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCT14070.11852553226977658No Hit
AAATCTTACCCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAG12260.10327811127416212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)