FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003291926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1179095
Sequences flagged as poor quality0
Sequence length25-324
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACT241942.051912695753947No Hit
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG224981.9080735648951102No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT205901.746254542678919No Hit
ATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCAC14180.12026172615438112No Hit
ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC13540.11483383442385897No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA13110.11118696966741441No Hit
GACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATTTAAGGAAC12860.10906669946017922No Hit
GCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATTTAAGGAACAAGT12770.10830340218557453No Hit
GTGGAGCCATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTAC12090.10253626722189475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)