FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003291931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1136368
Sequences flagged as poor quality0
Sequence length8-433
%GC45

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG228702.0125522717992763No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT105730.9304204271855595No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA56900.5007180772425834No Hit
GGCAGGTCAATTTCACTGGTTAAAAAGTAAGAGACAGCTGAACCCTCGTG18410.1620073778916689No Hit
GCCATACTAGTCTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTA18030.1586633907325796No Hit
GTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCT16510.14528744209622235No Hit
GTTTACCAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTG15770.13877546710220634No Hit
ATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCA12260.10788758571167087No Hit
GACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATTTAAGGAAC11870.10445559889050025No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCC11780.10366360193176857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)