FastQCFastQC Report
Sat 10 Sep 2022
EGAF00003291956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1412759
Sequences flagged as poor quality0
Sequence length8-621
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG251921.783177456310666No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT177331.255203470655646No Hit
GTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCT21240.15034411389345245No Hit
GGCAGGTCAATTTCACTGGTTAAAAAGTAAGAGACAGCTGAACCCTCGTG20380.14425673451735221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)