FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003291959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences881413
Sequences flagged as poor quality0
Sequence length25-290
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG114471.2987101392877118No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT74310.8430781030005231No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA13140.14907880868559914No Hit
GTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCT9030.10244913564923595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)