FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003291963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1223185
Sequences flagged as poor quality0
Sequence length25-316
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG148741.2160057554662624No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT134271.0977080327178637No Hit
GGCAGGTCAATTTCACTGGTTAAAAAGTAAGAGACAGCTGAACCCTCGTG15520.12688186987250497No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA15420.12606433205116152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)