FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003291970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1150610
Sequences flagged as poor quality0
Sequence length8-621
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG242832.1104457635515073No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT151741.3187787347580848No Hit
GTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCT25250.21944881410729963No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA15650.13601480953581144No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCC12830.11150607069293679No Hit
GGCAGGTCAATTTCACTGGTTAAAAAGTAAGAGACAGCTGAACCCTCGTG12090.10507469950721791No Hit
GACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATTTAAGGAAC11720.10185901391435846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)