FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003291978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862294
Sequences flagged as poor quality0
Sequence length25-307
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT156901.819565020746984No Hit
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG122251.417729915782784No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA16710.19378541425546275No Hit
ATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCAC15610.18102874425659926No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC12310.14275873426000876No Hit
ATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCC10730.12443551735255029No Hit
ATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCACGGTT10250.11886897044395531No Hit
GTGGAGCCATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTAC10190.11817315208038094No Hit
ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC9290.10773587662676536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)