FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003291985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003291985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences713242
Sequences flagged as poor quality0
Sequence length25-314
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG127731.7908367706893313No Hit
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT113991.5981952829474428No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA10220.14328937443392284No Hit
GGCAGGTCAATTTCACTGGTTAAAAAGTAAGAGACAGCTGAACCCTCGTG10190.1428687598318663No Hit
GACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATTTAAGGAAC10110.14174712089304892No Hit
GCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATTTAAGGAACAAGT8370.11735147397377048No Hit
ATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCAC7740.10851856733058345No Hit
GTGGAGCCATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTAC7540.10571446998353996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)