FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003293396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003293396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8190261
Sequences flagged as poor quality0
Sequence length126
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCTGCCAGTTGAAGAACTGTTGGAATTCTCGGGTGCCAAGGAACTCCA4257305.1980028475283016RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTCCTGGAATTCTCGGGTGCCAAGGAACTCCA2158132.634995392698719RNA PCR Primer, Index 1 (100% over 28bp)
TTCAAGTAATCCAGGATAGGCTTGGAATTCTCGGGTGCCAAGGAACTCCA2023122.4701532710618137RNA PCR Primer, Index 1 (100% over 28bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGTATGC1445181.7645103129192097RNA PCR Primer, Index 17 (100% over 50bp)
TGAGGTAGTAGGTTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA1164921.4223234155785756RNA PCR Primer, Index 1 (100% over 28bp)
TGAGATGAAGCACTGTAGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT1031751.259727864594303RNA PCR Primer, Index 1 (100% over 30bp)
TGAGGTAGTAGATTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA1020131.2455402825380046RNA PCR Primer, Index 1 (100% over 28bp)
TTCACAGTGGCTAAGTTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT982251.1992902301892454RNA PCR Primer, Index 1 (100% over 30bp)
CACCCGTAGAACCGACCTTGCGTGGAATTCTCGGGTGCCAAGGAACTCCA930851.136532767392883RNA PCR Primer, Index 1 (100% over 28bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTTGGAATTCTCGGGTGCC914971.1171438858908158No Hit
TGTAAACATCCTCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC851711.039905810083464RNA PCR Primer, Index 1 (100% over 26bp)
CCGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCT778520.9505435785257637RNA PCR Primer, Index 17 (100% over 43bp)
AACATTCAACGCTGTCGGTGAGTTGGAATTCTCGGGTGCCAAGGAACTCC771080.9414596189303369RNA PCR Primer, Index 1 (100% over 27bp)
TCCCTGAGACCCTTTAACCTGTTGGAATTCTCGGGTGCCAAGGAACTCCA746800.9118146540140785RNA PCR Primer, Index 1 (100% over 28bp)
TGAGGTAGTAGGTTGTATGGTTTGGAATTCTCGGGTGCCAAGGAACTCCA663950.8106579265300581RNA PCR Primer, Index 1 (100% over 28bp)
TGAGATGAAGCACTGTAGCTCTGGAATTCTCGGGTGCCAAGGAACTCCAG660400.806323510325251RNA PCR Primer, Index 1 (100% over 29bp)
CATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGTAT645560.7882044296268459RNA PCR Primer, Index 17 (100% over 48bp)
TTCACAGTGGCTAAGTTCTGCTGGAATTCTCGGGTGCCAAGGAACTCCAG557900.6811748734258896RNA PCR Primer, Index 1 (100% over 29bp)
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTA517610.6319823019071065RNA PCR Primer, Index 3 (97% over 36bp)
TGAGATGAAGCACTGTAGCTCTTGGAATTCTCGGGTGCCAAGGAACTCCA480430.5865869231761968RNA PCR Primer, Index 1 (100% over 28bp)
AACCCGTAGATCCGAACTTGTGTGGAATTCTCGGGTGCCAAGGAACTCCA441610.5391891662548972RNA PCR Primer, Index 1 (100% over 28bp)
AACATTCAACGCTGTCGGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCA434510.5305203338452827RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTCTGGAATTCTCGGGTGCCAAGGAACTCCAG434300.530263931759928RNA PCR Primer, Index 1 (100% over 29bp)
CACCCGTAGAACCGACCTTGCTGGAATTCTCGGGTGCCAAGGAACTCCAG430780.5259661444244573RNA PCR Primer, Index 1 (100% over 29bp)
TGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT429580.5245009896510013RNA PCR Primer, Index 1 (97% over 35bp)
TGTAAACATCCTCGACTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGT429220.5240614432189645RNA PCR Primer, Index 1 (100% over 30bp)
TCTTTGGTTATCTAGCTGTATGATGGAATTCTCGGGTGCCAAGGAACTCC374630.45740911064983153RNA PCR Primer, Index 1 (100% over 27bp)
GTTTAGACGGGCTCACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG363340.4436244461562336RNA PCR Primer, Index 6 (100% over 34bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTGGAATTCTCGGGTGCCA361150.4409505386946765No Hit
CGGGGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCT331340.40455365219740863RNA PCR Primer, Index 17 (100% over 43bp)
TTTAGACGGGCTCACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT323150.3945539708685718RNA PCR Primer, Index 1 (97% over 35bp)
CCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC321000.3919289018994633RNA PCR Primer, Index 1 (100% over 33bp)
TCCCTGAGACCCTAACTTGTGATGGAATTCTCGGGTGCCAAGGAACTCCA315720.38548222089625717RNA PCR Primer, Index 1 (100% over 28bp)
TAGCTTATCAGACTGATGTTGATGGAATTCTCGGGTGCCAAGGAACTCCA303000.36995158029762426RNA PCR Primer, Index 1 (100% over 28bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCC287720.3512952761822853RNA PCR Primer, Index 1 (100% over 27bp)
TGAGGTAGTAGGTTGTATAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG286960.35036734482576315RNA PCR Primer, Index 1 (100% over 29bp)
AACCCGTAGATCCGAACTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG280860.3429194747273622RNA PCR Primer, Index 1 (100% over 29bp)
TGAGGTAGTAGATTGTATAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG273870.33438494817198133RNA PCR Primer, Index 1 (100% over 29bp)
TGTAAACATCCTACACTCTCAGCTTGGAATTCTCGGGTGCCAAGGAACTC268550.3278894286763267RNA PCR Primer, Index 1 (100% over 26bp)
TATTGCACTCGTCCCGGCCTCCATGGAATTCTCGGGTGCCAAGGAACTCC267630.3267661433500105RNA PCR Primer, Index 1 (100% over 27bp)
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTTGGAATTCTCGGGTGCC266730.3256672772699185No Hit
TGAGGTAGGAGGTTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA263180.32133286106511133RNA PCR Primer, Index 1 (100% over 28bp)
TGTAAACATCCTTGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC258980.31620481935801553RNA PCR Primer, Index 1 (100% over 26bp)
TATTGCACTCGTCCCGGCCTCATGGAATTCTCGGGTGCCAAGGAACTCCA256950.31372626586625263RNA PCR Primer, Index 1 (100% over 28bp)
TAGCAGCACGTAAATATTGGCGTGGAATTCTCGGGTGCCAAGGAACTCCA256830.313579750388907RNA PCR Primer, Index 1 (100% over 28bp)
GGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCG255940.3124930939319272RNA PCR Primer, Index 17 (100% over 45bp)
CGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTC248580.30350681132139745RNA PCR Primer, Index 17 (100% over 44bp)
CATTATTACTTTTGGTACGCGTGGAATTCTCGGGTGCCAAGGAACTCCAG241370.2947036730575497RNA PCR Primer, Index 1 (100% over 29bp)
TCGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA238710.29145591330972237RNA PCR Primer, Index 1 (100% over 32bp)
CCCCCCACTGCTAAATTTGACTGGCTTTGGAATTCTCGGGTGCCAAGGAA224960.2746676815305397RNA PCR Primer, Index 1 (100% over 23bp)
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTTGGAATTCTCGGGTGCCA217420.2654616257039916No Hit
TCCCTGAGACCCTAACTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGT215590.26322726467447133RNA PCR Primer, Index 1 (100% over 30bp)
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTTGGAATTCTCGGGTGCC212500.25945449113282226No Hit
TCCCTGAGACCCTTTAACCTGTGATGGAATTCTCGGGTGCCAAGGAACTC206870.2525804733206915RNA PCR Primer, Index 1 (100% over 26bp)
TCGAGGAGCTCACAGTCTAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG201530.24606053457881258RNA PCR Primer, Index 1 (100% over 29bp)
CACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAG200530.24483957226759928RNA PCR Primer, Index 3 (97% over 37bp)
GTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTC190950.23314275332617604RNA PCR Primer, Index 17 (100% over 44bp)
ATGTTTAGACGGGCTCACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA188930.23067640945752524RNA PCR Primer, Index 1 (100% over 32bp)
TCCCTGAGACCCTTTAACCTGTGGAATTCTCGGGTGCCAAGGAACTCCAG187530.2289670622218266RNA PCR Primer, Index 1 (100% over 29bp)
TCCCTGAGACCCTAACTTGTGAATGGAATTCTCGGGTGCCAAGGAACTCC181360.2214337247616407RNA PCR Primer, Index 1 (100% over 27bp)
TGTTTAGACGGGCTCACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC181030.2210308071989403RNA PCR Primer, Index 1 (100% over 33bp)
TGAGGTAGTAGTTTGTACAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA179550.21922378297834466RNA PCR Primer, Index 1 (100% over 28bp)
TGAGGTAGTAGGTTGTGTGGTTTGGAATTCTCGGGTGCCAAGGAACTCCA176000.2148893667735375RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT171360.20922410164950786RNA PCR Primer, Index 1 (100% over 30bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCTGGAATTCTCGGGTGC165160.20165413531998555No Hit
TGAGATGAAGCACTGTAGCTCATGGAATTCTCGGGTGCCAAGGAACTCCA164150.20042096338566012RNA PCR Primer, Index 1 (100% over 28bp)
CCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGTA162030.19783252328588796RNA PCR Primer, Index 17 (100% over 47bp)
ACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT153110.1869415394698655RNA PCR Primer, Index 1 (97% over 35bp)
CTGGCGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATC146990.1794692501252402RNA PCR Primer, Index 17 (100% over 42bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCA145490.1776378066584203No Hit
GGCGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTC144050.17587962093027315RNA PCR Primer, Index 17 (100% over 44bp)
TGAGGTAGTAGTTTGTGCTGTTTGGAATTCTCGGGTGCCAAGGAACTCCA141240.17244871683576385RNA PCR Primer, Index 1 (100% over 28bp)
CGCGACCTCAGATCAGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC138110.16862710480166626RNA PCR Primer, Index 1 (100% over 33bp)
CCGCCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGAT137880.1683462834700872RNA PCR Primer, Index 17 (100% over 41bp)
CCCGGCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGA133450.16293742043141238RNA PCR Primer, Index 17 (100% over 40bp)
AAGCTGCCAGTTGAAGAACTGTGGAATTCTCGGGTGCCAAGGAACTCCAG129830.15851753686482029RNA PCR Primer, Index 1 (100% over 29bp)
TGAGGTAGGAGGTTGTATAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG129280.157846007593653RNA PCR Primer, Index 1 (100% over 29bp)
AACCCGTAGATCCGATCTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG128420.15679598000600958RNA PCR Primer, Index 1 (100% over 29bp)
TGTAAACATCCTCGACTGGAAGCTGGAATTCTCGGGTGCCAAGGAACTCC127670.1558802582725996RNA PCR Primer, Index 1 (100% over 27bp)
ACGGGCTCACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGA126130.15399997631333115RNA PCR Primer, Index 17 (100% over 40bp)
CACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG122310.14933590028449645RNA PCR Primer, Index 6 (100% over 34bp)
GGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGTATGCC122130.14911612706847804RNA PCR Primer, Index 17 (100% over 50bp)
CGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCG119550.14596604430554777RNA PCR Primer, Index 17 (100% over 45bp)
TGTAAACATCCTCGACTGGAATGGAATTCTCGGGTGCCAAGGAACTCCAG117040.14290142890440244RNA PCR Primer, Index 1 (100% over 29bp)
TGAGGTAGTAGGTTGTATGGTTGGAATTCTCGGGTGCCAAGGAACTCCAG114810.14017868295039682RNA PCR Primer, Index 1 (100% over 29bp)
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTTGGAATTCTCGGGTGCC113320.13835944910668901No Hit
GGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGT109870.1341471291330032RNA PCR Primer, Index 17 (100% over 46bp)
TATTGCACTCGTCCCGGCCTCTTGGAATTCTCGGGTGCCAAGGAACTCCA109120.13323140739959324RNA PCR Primer, Index 1 (100% over 28bp)
AACATTCAACGCTGTCGGTGATGGAATTCTCGGGTGCCAAGGAACTCCAG107050.13070401541538176RNA PCR Primer, Index 1 (100% over 29bp)
TCCCTGAGACCCTTTAACCTGTGTGGAATTCTCGGGTGCCAAGGAACTCC105010.12821325230050667RNA PCR Primer, Index 1 (100% over 27bp)
TCCCTGGTCTAGTGGTTAGGATTCGGCGCTTGGAATTCTCGGGTGCCAAG104840.1280056887076004No Hit
TATCGGGCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAG104680.12781033473780629RNA PCR Primer, Index 17 (100% over 39bp)
CGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC103420.12627192222567754RNA PCR Primer, Index 1 (100% over 31bp)
TTCAAGTAATCCAGGATAGGCTGGAATTCTCGGGTGCCAAGGAACTCCAG101360.12375673986457819RNA PCR Primer, Index 1 (100% over 29bp)
TGTAAACATCCCCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC100590.12281659888494396RNA PCR Primer, Index 1 (100% over 26bp)
TTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCG99450.12142470185016081RNA PCR Primer, Index 17 (100% over 45bp)
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTGGAATTCTCGGGTGCCA99090.12098515541812405No Hit
GAAGGATCATTATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGA97180.11865311740370667RNA PCR Primer, Index 17 (100% over 38bp)
GTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTA96950.11837229607212761RNA PCR Primer, Index 3 (97% over 36bp)
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTTGGAATTCTCGGGTGCC95380.11645538524352277No Hit
CCCCGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGAT94890.11585711371102825RNA PCR Primer, Index 17 (100% over 41bp)
TCTTTGGTTATCTAGCTGTATTGGAATTCTCGGGTGCCAAGGAACTCCAG93610.11429428195267526RNA PCR Primer, Index 1 (100% over 29bp)
TATTGCACTCGTCCCGGCCTCCTTGGAATTCTCGGGTGCCAAGGAACTCC93610.11429428195267526RNA PCR Primer, Index 1 (100% over 27bp)
TCAGTGCACTACAGAACTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCA92620.1130855292645741RNA PCR Primer, Index 1 (100% over 28bp)
TTCAAGTAATTCAGGATAGGTTTGGAATTCTCGGGTGCCAAGGAACTCCA91910.11221864602361269RNA PCR Primer, Index 1 (100% over 28bp)
GCCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCT91540.11176688996846376RNA PCR Primer, Index 17 (100% over 43bp)
CGGTGGAACCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGA90620.11064360464214755RNA PCR Primer, Index 17 (100% over 40bp)
CCTTCGATAGCTCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAG90360.11032615444123209RNA PCR Primer, Index 3 (97% over 37bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCTGGAATTCTCGGGTGC90220.11015521971766222No Hit
TAGCTTATCAGACTGATGTTGACTGGAATTCTCGGGTGCCAAGGAACTCC89470.10923949798425227RNA PCR Primer, Index 1 (100% over 27bp)
CGGGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCT88310.10782318170324487RNA PCR Primer, Index 17 (100% over 43bp)
TCTTTGGTTATCTAGCTGTATGTGGAATTCTCGGGTGCCAAGGAACTCCA87590.10694408883917131RNA PCR Primer, Index 1 (100% over 28bp)
TGAGGTAGTAAGTTGTATTGTTTGGAATTCTCGGGTGCCAAGGAACTCCA87540.10688304072361064RNA PCR Primer, Index 1 (100% over 28bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTGGAATTCTCGGGTGCCA87350.10665105788448012No Hit
AACCCGTAGATCCGATCTTGTGTGGAATTCTCGGGTGCCAAGGAACTCCA86060.10507601650301499RNA PCR Primer, Index 1 (100% over 28bp)
CCCGGGGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGAT85870.10484403366388445RNA PCR Primer, Index 17 (100% over 41bp)
TTTAGACGGGCTCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAG85830.10479519517143593RNA PCR Primer, Index 3 (97% over 37bp)
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTGGAATTCTCGGGTGCCAA85760.10470972780965099No Hit
GTCGCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCT85570.10447774497052047RNA PCR Primer, Index 17 (100% over 43bp)
GTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG85290.10413587552338076RNA PCR Primer, Index 6 (100% over 34bp)
CGGCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATC84810.10354981361399837RNA PCR Primer, Index 17 (100% over 42bp)
TTCACAGTGGCTAAGTTCTGCTTGGAATTCTCGGGTGCCAAGGAACTCCA84660.1033666692673164RNA PCR Primer, Index 1 (100% over 28bp)
CCGGGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATC82400.10060729444397437RNA PCR Primer, Index 17 (100% over 42bp)

[FAIL]Adapter Content

Adapter graph