FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003293431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003293431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3849305
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG47540.12350281414437153No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC44980.11685226294097247No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC39020.10136894842055905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)