FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003294879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003294879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16866070
Sequences flagged as poor quality0
Sequence length35-69
%GC32

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN15286289.063332477571835No Hit
GTGGCGGGCGTTTGTAGTTTTAGTTATTTGGGAGGTTGAGGTAGGAGAATGGCGTGAATTTG178370.10575670562259021No Hit
AGGTGGGGGGGTTAGTTTTTCGTTTGNNNNNNNNN169070.10024267656899326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)