FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003294902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003294902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21176742
Sequences flagged as poor quality0
Sequence length35-69
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN224493710.600955519975642No Hit
AGGTGGGGGGGTTAGTTTTTCGTTTGNNNNNNNNN331600.15658688196701834No Hit
TTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTTTTAGTTG318030.1501789085403222No Hit
GGGTTGATTTTTTTATTTTTTTTTTGNNNNNNNNN253720.11981068664858835No Hit
CGTTATTTTTTTGTTTTAGTTTTTTAAGTAGTTGGGATTATAGGCGTTCGTTATTACGTTTG241720.11414409260876862No Hit
GGAGTTTGTAGTGAGTCGAGATTGCGTTATTGTAGTTCGTAGTTTG218910.10337284177141129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)