FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003294904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003294904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23035531
Sequences flagged as poor quality0
Sequence length35-69
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN244280210.604496158564784No Hit
TTTATTGGGAAGTGAGGAGTTTTTTTGTTTGNNNN643880.2795160224437631No Hit
AGGTGGGGGGGTTAGTTTTTCGTTTGNNNNNNNNN542700.23559257218772164No Hit
GGGGTTTTTTATTTTTTAGTAGGGGCGGTTGNNNN386490.16777993960720938No Hit
GGGTTGATTTTTTTATTTTTTTTTTGNNNNNNNNN375930.16319571708592262No Hit
GTGGCGGGCGTTTGTAGTTTTAGTTATTTGGGAGGTTGAGGTAGGAGAATGGCGTGAATTTG373020.16193245122068164No Hit
GGAGTTTGTAGTGAGTCGAGATTGCGTTATTGTAGTTCGTAGTTTG302000.13110181831710324No Hit
GTGGCGGGCGTTTGTAGTTTTAGTTATTCGGGAGGTTGAGGTAGGAGAATGGCGTGAATTTG288120.1250763440182907No Hit
GGATTGTAGTGGCGTAATTTCGGTTTATTGTAAGTTTCGTTTTTTG274010.11895102396380618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)