FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003296706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003296706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences872494
Sequences flagged as poor quality0
Sequence length25-368
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT92731.062815331681364No Hit
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG88891.0188035677036176No Hit
GGCAGGTCAATTTCACTGGTTAAAAAGTAAGAGACAGCTGAACCCTCGTG19570.22429953673033853No Hit
GTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCT9030.10349641372891963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)