FastQCFastQC Report
Sun 14 May 2023
EGAF00003297147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003297147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45937694
Sequences flagged as poor quality0
Sequence length97
%GC34

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC793510.17273614126124834TruSeq Adapter, Index 8 (100% over 50bp)
TCGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGAGATCG496930.10817478125915506No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)