FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003435081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003435081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31944487
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG624330.1954421744196424No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC566580.17736393763343267TruSeq Adapter, Index 11 (100% over 50bp)
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA436720.13671216570170622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)