FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003435196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003435196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31121728
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC536300.17232333628775368No Hit
GAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATAT323720.1040173604756137No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG318860.10245575052901947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)