FastQCFastQC Report
Sun 5 May 2024
EGAF00003435208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003435208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27647567
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGG354520.12822828135293063No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG333710.12070139842684892No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCTAAACCATTTAC297890.10774546635514076No Hit
CTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCT293720.1062371962060893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)