FastQCFastQC Report
Sun 12 May 2024
EGAF00003435257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003435257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29344249
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG454100.1547492321238141No Hit
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA392810.13386268634784282No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT372760.1270300016878946No Hit
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC293880.10014909565414333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)