FastQCFastQC Report
Sat 13 May 2023
EGAF00003435260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003435260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26776963
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC562460.21005369428937853No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG495240.18495002588605736No Hit
GAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATAT352880.13178492273376932No Hit
CGGTAATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCTCT318280.11886336773890302No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA304910.11387026975389256No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG304050.11354909815575426No Hit
CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCT295210.11024775289116993No Hit
CTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAG275320.10281972604585517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)