FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003442419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4829280
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN161490.33439767418745653No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN53390.11055478249345659No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNN51560.10676539774044991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)