FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003442444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences871797
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTC249602.8630518343146396No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT37680.4322107096032677No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCG12820.147052582195167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)