FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1081603
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTC162231.49990338414372RNA PCR Primer, Index 27 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT45710.4226134727806783No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCG16270.15042487862921977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)