FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003442524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3335435
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTC639871.9184004485172097No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGT100190.300380610025379No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCG45100.13521474710195222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)