FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003442538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences700397
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC292634.178059015101435No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGT26020.3715035901067537RNA PCR Primer, Index 26 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCG9820.1402061973423644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)