FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003442605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1694888
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN53610.31630408616970557No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN17690.10437267831266726No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNN17180.10136362992716923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)