FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1165735
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGTC187831.6112581332807199No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCGT41470.3557412276374991No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGTTGGGATCTCGTATGCCG12800.1098019704306725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)