FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003442635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1291607
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN42600.3298216872469722No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN14310.11079221465972235No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNN13190.10212084635651557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)