FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003442652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003442652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences713493
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTC19609527.483801522930147No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT280253.9278591380714314No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCG127431.7860021051362802No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCC13800.19341465158032387No Hit
TTCTATGGCTGAGGGGAGTCAGGGGTGGAGACCTAATTGGGCTGATTTGCC7430.10413556965520333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)